SMTL ID : 7aw8.1

Alpha-actinin in Rhodamnia argentea

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 7 residues within 4Å: Chain A: R.59, K.60, T.63, E.78, N.79, I.80, E.81 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.59 Hydrogen bonds: A:T.63, A:I.80 Salt bridges: A:R.59 ACY.2: 7 residues within 4Å: Chain A: A.53, K.56, Q.57, E.250, D.251, T.254, S.255 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.57, A:D.251, A:T.254 Water bridges: A:K.56 Salt bridges: A:K.56

5 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 6 residues within 4Å: Chain A: P.185, Y.186, K.187, N.188, Y.218, N.219 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.187 FMT.4: 7 residues within 4Å: Chain A: R.46, A.47, W.153, K.172, E.260, R.261, M.264 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.153, A:K.172, A:R.261, A:R.261 Water bridges: A:R.261 FMT.5: 5 residues within 4Å: Chain A: V.166, E.167, A.168, S.169, L.177 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.168, A:S.169, A:S.169 Water bridges: A:E.173 FMT.6: 4 residues within 4Å: Chain A: K.187, N.188, N.190, R.223 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.190, A:R.223, A:R.223 FMT.7: 4 residues within 4Å: Chain A: N.188, L.221, T.222, R.223 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.188, A:R.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Persson, K. et al., Structural and functional characterization of a plant alpha-actinin. Febs Open Bio (2021)

Release Date

2021-08-11

Peptides

Alpha actinin, actin binding domain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha actinin, actin binding domain