SMTL ID : 7awc.1

Crystal structure of Peroxisome proliferator-activated receptor gamma (PPARG)in complex with rosiglitazone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

1 x BRL: 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)(Non-covalent)

BRL.1: 16 residues within 4Å: Chain A: I.81, F.82, G.84, C.85, S.89, H.123, Y.127, L.130, V.139, I.141, M.148, M.164, H.249, L.253, L.269, Y.273 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.89, A:Y.273, A:Y.273 Water bridges: A:S.142

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: M.2, Q.3, L.4, S.8, R.12, L.219, L.223 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.8 GOL.3: 3 residues within 4Å: Chain A: R.34, N.135, K.136 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.135, A:K.136 Water bridges: A:R.34, A:R.34, A:K.136 GOL.4: 3 residues within 4Å: Chain A: E.76, V.77, R.80 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.77, A:R.80 Water bridges: A:S.74, A:K.75, A:E.76, A:E.76, A:R.80 GOL.5: 3 residues within 4Å: Chain A: L.268, E.271, I.272 No protein-ligand interaction detected (PLIP) GOL.6: 4 residues within 4Å: Chain A: K.136, D.137, R.150, E.151 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.137, A:D.137, A:E.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Willems, S. et al., Endogenous vitamin E metabolites mediate allosteric PPAR gamma activation with unprecedented co-regulatory interactions. Cell Chem Biol (2021)

Release Date

2020-11-25

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

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