SMTL ID : 7axy.1

Crystal structure of a shortened IpgC variant in complex with 3-amino-5-(pyrrolidin-1-yl)-1H-pyrazole-4-carbonitrile

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: A.111, P.112, L.113, K.114 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain B: G.1, S.2, I.3, S.4 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: Y.39, F.51, G.67 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.39

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x E9Q: 5-azanyl-3-pyrrolidin-1-yl-1~{H}-pyrazole-4-carbonitrile(Non-covalent)

E9Q.5: 12 residues within 4Å: Chain A: F.89, K.93, N.94, Y.96 Chain B: A.86, F.89, T.102, Q.106, K.114, E.117, C.118, L.121 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:A.86, A:F.89, A:K.93 Hydrogen bonds: B:Q.106 Water bridges: A:N.94, A:N.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gardonyi, M. et al., Crystal structure of a shortened IpgC variant in complex with 3-amino-5-(pyrrolidin-1-yl)-1H-pyrazole-4-carbonitrile. To be published

Release Date

2021-11-24

Peptides

Chaperone protein IpgC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Chaperone protein IpgC

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