SMTL ID : 7b0w.1

Crystal structure of the E. coli type 1 pilus assembly inhibitor FimI bound to FimC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: P.124, Y.148, Y.149, L.150, I.190, D.192 Ligands: FMT.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.149 Water bridges: A:A.127, A:T.151, A:D.192 EDO.2: 5 residues within 4Å: Chain A: L.98, T.99, E.100 Chain B: I.128, N.130 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:T.99, A:E.100 Hydrogen bonds: B:N.130

10 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 4 residues within 4Å: Chain A: N.191, D.192, Y.193 Ligands: EDO.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.192 Water bridges: A:Y.193 FMT.4: 4 residues within 4Å: Chain A: T.186, K.199, M.200, T.201 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.201, A:T.201 FMT.5: 4 residues within 4Å: Chain A: S.35, W.36, I.49, V.50 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.50 FMT.6: 4 residues within 4Å: Chain A: D.69, A.70, T.71, N.72 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.70, A:N.72 Water bridges: A:T.71 FMT.7: 6 residues within 4Å: Chain A: R.134, S.136, S.139, L.140, T.141, T.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.139 Water bridges: A:R.134, A:T.141 FMT.8: 1 residues within 4Å: Chain A: Q.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.74 FMT.9: 3 residues within 4Å: Chain A: K.88, I.90 Chain B: W.134 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.88 Water bridges: B:W.134 FMT.10: 2 residues within 4Å: Chain B: S.69, G.71 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Q.132 FMT.11: 4 residues within 4Å: Chain B: R.24, E.30, D.31, S.32 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.31 FMT.12: 5 residues within 4Å: Chain A: R.110 Chain B: A.55, H.57, S.136, T.138 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.138, A:R.110 Water bridges: B:S.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Giese, C. et al., Comprehensive kinetic characterization of bacterial pilus rod assembly and assembly termination. To Be Published

Release Date

2021-12-08

Peptides

Chaperone protein FimC: A
Fimbrin-like protein FimI: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
I

Chaperone protein FimC

Fimbrin-like protein FimI

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