SMTL ID : 7b1a.1

Myosin-II-AA mutant motor domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 1 residues within 4Å: Chain A: R.413 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.197, S.248, D.465 Ligands: AD9.7 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.197, A:S.248, H2O.1, H2O.2

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: R.44, I.63, S.65, E.66 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.63 EDO.4: 11 residues within 4Å: Chain A: F.250, G.251, Y.272, L.273, I.466, S.467, C.481, I.482, T.485, N.486, Y.645 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.251, A:L.273, A:S.467, A:T.485 EDO.5: 8 residues within 4Å: Chain A: L.38, T.39, S.41, K.43, Y.45, P.93, I.94, K.95 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.41

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.6: 4 residues within 4Å: Chain A: S.106, Y.107, L.108, R.700 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.108 Water bridges: A:L.108, A:N.109 Salt bridges: A:R.700

1 x AD9: ADP METAVANADATE

AD9.7: 28 residues within 4Å: Chain A: I.126, Y.127, N.138, P.139, F.140, K.141, R.142, I.143, Y.146, E.191, S.192, G.193, A.194, G.195, K.196, T.197, E.198, N.199, T.241, N.244, N.246, S.247, S.248, R.249, I.466, S.467, G.468 Ligands: MG.2 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:N.138, A:Y.146, A:G.193, A:A.194, A:G.195, A:K.196, A:K.196, A:T.197, A:E.198, A:N.244, A:S.247, A:S.248, A:G.468 Water bridges: A:T.197, A:N.199, A:N.238, A:R.249, A:R.249, A:E.470 Salt bridges: A:K.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Franz, P. et al., Unraveling a Force-Generating Allosteric Pathway of Actomyosin Communication Associated with ADP and P i Release. Int J Mol Sci (2020)

Release Date

2021-01-13

Peptides

Myosin-2 heavy chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myosin-2 heavy chain