SMTL ID : 7b34.1

MST3 in complex with compound MRIA12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: H.165 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.58 EDO.2: 5 residues within 4Å: Chain A: S.270, F.271, R.272, P.273, E.277 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.271, A:E.277 EDO.3: 5 residues within 4Å: Chain A: K.149, K.150, I.151, D.207, S.208 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.149, A:S.208 EDO.4: 5 residues within 4Å: Chain A: D.154, K.156, N.159, D.172 Ligands: SQK.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.156, A:N.159, A:D.172, A:D.172 EDO.5: 4 residues within 4Å: Chain A: D.207, K.209, P.269, S.270 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.209 EDO.6: 3 residues within 4Å: Chain A: K.276, L.279, K.280 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.276, A:K.280 EDO.7: 2 residues within 4Å: Chain A: E.164, H.165 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.164, A:E.164, A:H.165

1 x SQK: 8-[(5-azanyl-1,3-dioxan-2-yl)methyl]-6-[2-chloranyl-4-(3-fluoranyl-6-methyl-pyridin-2-yl)phenyl]-2-(methylamino)pyrido[2,3-d]pyrimidin-7-one(Non-covalent)

SQK.8: 20 residues within 4Å: Chain A: I.40, F.45, V.48, A.61, K.63, I.77, E.80, I.81, L.84, Y.95, I.107, M.109, E.110, Y.111, L.112, A.158, N.159, L.161, D.172 Ligands: EDO.4 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.45, A:A.61, A:K.63, A:E.80, A:E.80, A:I.81, A:L.84, A:I.107, A:I.107, A:L.161 Hydrogen bonds: A:L.112, A:L.112, A:A.158, A:D.172 Water bridges: A:K.63 Halogen bonds: A:A.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tesch, R. et al., Structure-Based Design of Selective Salt-Inducible Kinase Inhibitors. J.Med.Chem. (2021)

Release Date

2020-12-16

Peptides

Serine/threonine-protein kinase 24: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase 24

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