SMTL ID : 7b3b.1

Structure of elongating SARS-CoV-2 RNA-dependent RNA polymerase with Remdesivir at position -3 (structure 1)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.298, C.304, C.309, C.313 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.298, A:C.304, A:C.309, A:C.313 ZN.2: 4 residues within 4Å: Chain A: C.490, H.645, C.648, C.649 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.490, A:H.645, A:C.648, A:C.649

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kokic, G. et al., Mechanism of SARS-CoV-2 polymerase stalling by remdesivir. Nat Commun (2021)

Release Date

2020-12-23

Peptides

RNA-directed RNA polymerase nsp12: A
Non-structural protein 8: B
Non-structural protein 7: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

RNA-directed RNA polymerase nsp12

Non-structural protein 8

Non-structural protein 7

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