SMTL ID : 7b3t.1

Crystal structure of c-MET bound by compound 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

monomer

Ligands

1 x SVK: 3-(phenylmethyl)-1~{H}-pyrrolo[2,3-b]pyridine(Non-covalent)

SVK.1: 11 residues within 4Å: Chain A: I.37, F.42, V.45, A.61, L.110, P.111, Y.112, M.113, M.164, A.179, M.182 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.37, A:F.42, A:V.45, A:L.110, A:A.179 Hydrogen bonds: A:P.111, A:M.113

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: H.115, H.127 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: K.271, R.289 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.271, A:R.289 SO4.4: 3 residues within 4Å: Chain A: H.89, K.143, K.146 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.91 Salt bridges: A:H.89, A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collie, G.W. et al., Structural Basis for Targeting the Folded P-Loop Conformation of c-MET. Acs Med.Chem.Lett. (2021)

Release Date

2020-12-09

Peptides

Hepatocyte growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hepatocyte growth factor receptor

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