SMTL ID : 7b44.1

Crystal structure of c-MET bound by compound S1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x SVT: 5-methoxy-1~{H}-indazole(Non-covalent)

SVT.1: 11 residues within 4Å: Chain A: I.37, F.42, V.45, A.61, L.110, P.111, Y.112, M.113, M.164, A.179, M.182 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.42, A:A.61 Hydrogen bonds: A:M.113 Water bridges: A:M.113 pi-Stacking: A:F.42

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 8 residues within 4Å: Chain A: M.84, L.93, S.94, L.95, L.110, F.176, L.178, A.179 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.178 DMS.3: 5 residues within 4Å: Chain A: Y.237, P.238, D.239, V.240, Y.248 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.239, A:V.240 Salt bridges: A:D.239

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: K.271, R.289 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.289 Salt bridges: A:K.271, A:R.289 SO4.5: 6 residues within 4Å: Chain A: V.36, I.37, G.38, R.39, H.47, Y.112 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.38, A:Y.112 Salt bridges: A:R.39, A:H.47 SO4.6: 3 residues within 4Å: Chain A: H.89, K.143, K.146 5 PLIP interactions: 5 interactions with chain A Water bridges: A:H.89, A:K.146 Salt bridges: A:H.89, A:K.143, A:K.146 SO4.7: 4 residues within 4Å: Chain A: I.30, V.31, H.32, N.34 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.34 Water bridges: A:V.31, A:F.33 Salt bridges: A:H.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collie, G.W. et al., Structural Basis for Targeting the Folded P-Loop Conformation of c-MET. Acs Med.Chem.Lett. (2021)

Release Date

2020-12-09

Peptides

Hepatocyte growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hepatocyte growth factor receptor

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