SMTL ID : 7b4r.1

Structure of the 4'-phosphopantetheinyl transferase PptAb from Mycobacterium abscessus in complex with Coenzyme A and N-(2,6-diethylphenyl)-N'-(N-ethylcarbamimidoyl)urea

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x FD7: N-(2,6-diethylphenyl)-N'-(N-ethylcarbamimidoyl)urea(Non-covalent)

FD7.1: 12 residues within 4Å: Chain A: F.149, K.152, E.153, T.155, Y.156, K.157, W.166, L.167, G.168, F.169, A.172 Ligands: COA.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.167 Hydrogen bonds: A:K.152, A:E.153 Salt bridges: A:E.153 pi-Cation interactions: A:F.169

1 x COA: COENZYME A(Non-covalent)

COA.2: 20 residues within 4Å: Chain A: R.45, F.49, V.52, R.53, K.72, K.75, G.76, Q.77, P.78, M.88, T.89, H.90, D.111, Y.156, K.157, F.160, P.161 Ligands: FD7.1, MN.3, MN.4 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.89, A:H.90, A:Y.156, A:Y.156 Water bridges: A:K.72, A:K.72, A:K.72, A:K.72, A:S.87, A:A.112, A:A.112 Salt bridges: A:R.45, A:R.53, A:K.72, A:H.90, A:H.90, A:K.157

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 2 residues within 4Å: Chain A: H.90 Ligands: COA.2 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.90, A:H.90, H2O.1, H2O.7, H2O.8 MN.4: 5 residues within 4Å: Chain A: T.89, D.111, E.153, K.157 Ligands: COA.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.111, H2O.1, H2O.1, H2O.1, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carivenc, C. et al., Phosphopantetheinyl transferase binding and inhibition by amidino-urea and hydroxypyrimidinethione compounds. Sci Rep (2021)

Release Date

2021-11-10

Peptides

Possible 4'-phosphopantetheinyl transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Possible 4'-phosphopantetheinyl transferase

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