SMTL ID : 7b63.1

Structure of NUDT15 in complex with TH7755

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x SYW: (R)-6-((2-methyl-4-(1-methyl-1H-indole-5-carbonyl)piperazin-1-yl)sulfonyl)benzo[d]oxazol-2(3H)-one(Non-covalent)

SYW.1: 18 residues within 4Å: Chain A: G.15, V.16, G.17, V.38, Q.44, L.45, P.46, G.48, H.49, E.88, N.89, Y.90, Y.92, T.94, F.135, W.136, G.137, L.138 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.38, A:Y.92, A:T.94, A:W.136 Hydrogen bonds: A:V.16, A:L.45, A:L.45, A:G.137, A:L.138 Water bridges: A:R.34 pi-Stacking: A:Y.90, A:Y.90 SYW.3: 17 residues within 4Å: Chain B: G.15, V.16, G.17, V.38, Q.44, L.45, P.46, G.48, H.49, E.88, Y.90, Y.92, T.94, F.135, W.136, G.137, L.138 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:V.38, B:Y.92, B:T.94, B:W.136 Hydrogen bonds: B:V.16, B:L.45, B:L.45, B:G.48, B:G.137, B:L.138 pi-Stacking: B:Y.90, B:Y.90

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: G.47, E.63, E.67 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.63, A:E.67, H2O.6, H2O.6, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rehling, D. et al., Crystal structures of NUDT15 variants enabled by a potent inhibitor reveal the structural basis for thiopurine sensitivity. J.Biol.Chem. (2021)

Release Date

2021-03-24

Peptides

Probable 8-oxo-dGTP diphosphatase NUDT15: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable 8-oxo-dGTP diphosphatase NUDT15

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