SMTL ID : 7b6p.2 (1 other biounit)

Crystal structure of E.coli MurE - C269S C340S C450S in complex with Ellman's reagent

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x 9JT: N-phenyl-2-selanylbenzamide(Non-covalent)

9JT.1: 14 residues within 4Å: Chain A: G.114, V.115, T.116, V.185, L.190, F.200, S.203, F.205, Y.230, H.233, C.235, I.240, W.250 Ligands: IPA.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.185, A:V.185, A:F.205, A:I.240, A:I.240 Hydrogen bonds: A:S.203, A:S.203 pi-Stacking: A:F.200, A:Y.230

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 5 residues within 4Å: Chain A: K.226, W.227, Y.230, W.250 Ligands: 9JT.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.226, A:W.227, A:W.250

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 6 residues within 4Å: Chain A: T.118, N.119, G.120, K.121, T.122, T.144 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.118, A:N.119, A:G.120, A:K.121, A:K.121, A:T.122, A:T.122 Water bridges: A:T.123 Salt bridges: A:K.121

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: G.379, K.380, K.457, N.459, D.460 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.380, A:K.380, A:K.380, A:N.459

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koekemoer, L. et al., Crystal structure of MurE from E.coli. To Be Published

Release Date

2020-12-23

Peptides

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase

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