SMTL ID : 7b7a.1

ENDO-POLYGALACTURONASE FROM ARABIDOPSIS THALIANA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: D.202, N.225, I.226, N.227, N.255, E.409 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.227

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.2: 13 residues within 4Å: Chain A: Y.304, C.311, H.312, N.313, R.338, A.340, D.343, F.370, C.371, W.372, K.373, C.388, K.390 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.304, A:F.370, A:W.372 Hydrogen bonds: A:R.338

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Safran, J. et al., Plant polygalacturonase structures specify enzyme dynamics and processivities to fine-tune cell wall pectins. Plant Cell (2023)

Release Date

2022-06-22

Peptides

Pectin lyase-like superfamily protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pectin lyase-like superfamily protein