SMTL ID : 7b7z.1

DeAMPylation complex of monomeric FICD and AMPylated BiP (state 1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Covalent)

AMP.1: 17 residues within 4Å: Chain A: T.492 Chain B: E.132, V.214, H.217, H.254, V.258, D.265, G.266, N.267, G.268, R.272, Y.297, Y.298, L.301, E.302, N.305 Ligands: MG.3 18 PLIP interactions: 17 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.132, B:E.132, B:H.217, B:D.265, B:G.266, B:N.267, B:N.267, B:G.268, B:R.272, B:Y.297, B:Y.297, B:N.305, B:N.305, A:T.492 Water bridges: B:H.216, B:R.269, B:R.269, B:R.269

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 9 residues within 4Å: Chain A: A.182, D.186, K.187, G.361, I.362, N.363, E.366, A.367, Y.370 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.361, A:N.363 Water bridges: A:D.186 Salt bridges: A:D.186

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: T.492 Chain B: D.265 Ligands: AMP.1 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.265, H2O.1, H2O.4, H2O.11, H2O.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perera, L.A. et al., Structures of a deAMPylation complex rationalise the switch between antagonistic catalytic activities of FICD. Nat Commun (2021)

Release Date

2021-07-07

Peptides

Endoplasmic reticulum chaperone BiP: A
Protein adenylyltransferase FICD: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Endoplasmic reticulum chaperone BiP

Protein adenylyltransferase FICD

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