SMTL ID : 7bam.1

human Teneurin4 WT C2

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

8 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: Y.764, Y.773, N.776, T.789, D.790 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain A: L.1477, N.1495, S.1497, S.1498, N.1562 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain A: R.1805, G.1811, N.1813, Y.1837, G.1838 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain A: N.107, P.114, Y.118, R.140 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 5 residues within 4Å: Chain B: Y.764, Y.773, N.776, T.789, D.790 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain B: L.1477, N.1495, S.1497, S.1498, N.1562 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 5 residues within 4Å: Chain B: R.1805, G.1811, N.1813, Y.1837, G.1838 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 4 residues within 4Å: Chain B: N.107, P.114, Y.118, R.140 No protein-ligand interaction detected (PLIP)

14 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.9: 3 residues within 4Å: Chain A: E.863, T.871, N.872 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.871, A:N.872 NAG.10: 3 residues within 4Å: Chain A: Q.948, N.966, L.977 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.977 Hydrogen bonds: A:Q.948, A:N.966 NAG.11: 3 residues within 4Å: Chain A: N.1051, T.1053, Q.1064 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.1053, A:T.1053, A:T.1053 NAG.12: 3 residues within 4Å: Chain A: L.390, S.424, N.426 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.424 NAG.13: 4 residues within 4Å: Chain A: T.906, N.908, F.915, T.917 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.915 Hydrogen bonds: A:N.908 NAG.14: 3 residues within 4Å: Chain A: N.1152, L.1171, G.1172 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.1172 NAG.15: 1 residues within 4Å: Chain A: N.1355 No protein-ligand interaction detected (PLIP) NAG.19: 3 residues within 4Å: Chain B: E.863, T.871, N.872 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.871, B:N.872 NAG.20: 3 residues within 4Å: Chain B: Q.948, N.966, L.977 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.977 Hydrogen bonds: B:Q.948, B:N.966 NAG.21: 3 residues within 4Å: Chain B: N.1051, T.1053, Q.1064 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.1053, B:T.1053, B:T.1053 NAG.22: 3 residues within 4Å: Chain B: L.390, S.424, N.426 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.424 NAG.23: 4 residues within 4Å: Chain B: T.906, N.908, F.915, T.917 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.915 Hydrogen bonds: B:N.908 NAG.24: 3 residues within 4Å: Chain B: N.1152, L.1171, G.1172 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.1172 NAG.25: 1 residues within 4Å: Chain B: N.1355 No protein-ligand interaction detected (PLIP)

6 x CA: CALCIUM ION(Non-covalent)

CA.16: 6 residues within 4Å: Chain A: E.2, A.4, D.7, K.9, N.11, D.18 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.2, A:A.4, A:D.7, A:K.9, A:D.18 CA.17: 6 residues within 4Å: Chain A: E.2, D.10, D.12, D.14, L.16, D.21 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:E.2, A:D.10, A:D.12, A:D.14, A:L.16, A:D.21 CA.18: 4 residues within 4Å: Chain A: D.12, D.14, D.21, D.23 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.12, A:D.14, A:D.21, A:D.21, A:D.23 CA.26: 6 residues within 4Å: Chain B: E.2, A.4, D.7, K.9, N.11, D.18 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.2, B:A.4, B:D.7, B:K.9, B:D.18 CA.27: 6 residues within 4Å: Chain B: E.2, D.10, D.12, D.14, L.16, D.21 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:E.2, B:D.10, B:D.12, B:D.14, B:L.16, B:D.21 CA.28: 4 residues within 4Å: Chain B: D.12, D.14, D.21, D.23 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.12, B:D.14, B:D.21, B:D.21, B:D.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meijer, D.H. et al., Teneurin4 dimer structures reveal a calcium-stabilized compact conformation supporting homomeric trans-interactions. Embo J. (2022)

Release Date

2021-12-01

Peptides

Teneurin-4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Teneurin-4