SMTL ID : 7bdj.1

Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and mant-ATPgammaS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

hetero-1-1-mer

Ligands

2 x TGB: [[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-[2-(methylamino)phenyl]carbonyloxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-sulfanyl-phosphinic acid(Non-covalent)

TGB.1: 17 residues within 4Å: Chain A: F.89, T.91, L.92, N.93, Q.96, T.116, G.117, A.118, G.119, K.120, T.121, N.122, M.162, D.226, E.227, N.431 Ligands: MG.3 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.89 Hydrogen bonds: A:N.93, A:Q.96, A:Q.96, A:T.116, A:T.116, A:G.117, A:A.118, A:G.119, A:K.120, A:T.121, A:T.121, A:N.122, A:N.431 Water bridges: A:Q.462 Salt bridges: A:K.120 pi-Stacking: A:F.89 TGB.2: 20 residues within 4Å: Chain A: F.936, F.938, F.939, N.940, Q.943, P.962, T.963, G.964, S.965, G.966, K.967, T.968, I.969, D.1065, E.1066, N.1266, A.1268, N.1303, P.1305 Ligands: MG.4 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:A.1268 Hydrogen bonds: A:N.940, A:N.940, A:Q.943, A:Q.943, A:P.962, A:G.964, A:S.965, A:G.966, A:K.967, A:T.968, A:T.968, A:E.1066 Salt bridges: A:K.967 pi-Stacking: A:F.936

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: K.120, D.226, E.227 Ligands: TGB.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.226, A:E.227 MG.4: 4 residues within 4Å: Chain A: K.967, D.1065, E.1066 Ligands: TGB.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.1065

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Absmeier, E. et al., Long-range allostery mediates cooperative adenine nucleotide binding by the Ski2-like RNA helicase Brr2. J.Biol.Chem. (2021)

Release Date

2021-06-09

Peptides

U5 small nuclear ribonucleoprotein 200 kDa helicase: A
Pre-mRNA-processing-splicing factor 8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
J

U5 small nuclear ribonucleoprotein 200 kDa helicase

Pre-mRNA-processing-splicing factor 8

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