SMTL ID : 7bhe.1 (1 other biounit)

DARPin_D5/Her3 domain 4 complex, monoclinic crystals

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: G.93, H.94, L.95, E.96, I.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.95, A:E.96, A:I.97 GOL.3: 7 residues within 4Å: Chain A: A.90, W.91, V.92, G.93, N.125, N.127, L.130 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.90, A:N.125, A:N.127

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 8 residues within 4Å: Chain A: N.83, W.91, K.113, F.114 Chain B: L.101, G.102, A.103, G.105 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:A.103 Salt bridges: A:K.113 ACT.4: 7 residues within 4Å: Chain B: S.77, D.78, C.80, C.83, R.87, P.90, C.92 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.90 Salt bridges: B:R.87 ACT.5: 5 residues within 4Å: Chain B: H.98, K.109, C.120, G.127, C.128 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.109, B:C.128 Water bridges: B:H.98 Salt bridges: B:H.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Radom, F. et al., Crystal structures of HER3 extracellular domain 4 in complex with the designed ankyrin-repeat protein D5. Acta Crystallogr.,Sect.F (2021)

Release Date

2021-11-24

Peptides

DARPin_D5: A
Receptor tyrosine-protein kinase erbB-3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DARPin_D5

Receptor tyrosine-protein kinase erbB-3

Related Entries With Identical Sequence