SMTL ID : 7bhy.2 (1 other biounit)

DNA-binding domain of DeoR in complex with the DNA operator

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: Y.18, S.24, Q.25, R.36 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.18, A:Q.25, A:Q.25 Water bridges: A:Q.26 Salt bridges: A:R.36 PO4.2: 3 residues within 4Å: Chain A: Y.18, S.40, Q.44 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.18, A:Q.44 PO4.3: 4 residues within 4Å: Chain B: Y.18, S.24, Q.25, R.36 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.18, B:Q.25, B:Q.25 Water bridges: B:Q.26 Salt bridges: B:R.36 PO4.4: 3 residues within 4Å: Chain B: Y.18, S.40, Q.44 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.18, B:Q.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Soltysova, M. et al., Structural insight into DNA recognition by bacterial transcriptional regulators of the SorC/DeoR family. Acta Crystallogr D Struct Biol (2021)

Release Date

2021-11-10

Peptides

Deoxyribonucleoside regulator: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

Deoxyribonucleoside regulator

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