SMTL ID : 7bi2.1

PI3KC2aDeltaN and DeltaC-C2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: K.17, L.18, K.21 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.21

1 x 17G: 9-(6-aminopyridin-3-yl)-1-[3-(trifluoromethyl)phenyl]benzo[h][1,6]naphthyridin-2(1H)-one(Non-covalent)

17G.2: 18 residues within 4Å: Chain A: F.730, S.732, P.736, M.754, K.756, D.764, F.790, V.802, E.803, L.804, V.805, S.808, D.809, T.810, M.875, I.885, D.886 Ligands: IOD.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.730, A:F.730, A:V.802, A:T.810, A:I.885, A:I.885 Hydrogen bonds: A:D.764, A:V.805

5 x IOD: IODIDE ION(Non-functional Binders)

IOD.3: 2 residues within 4Å: Chain A: T.307, D.457 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: L.804 Ligands: 17G.2 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: E.56, I.57, L.60 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: H.523, N.525 Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain A: Q.305, I.369, P.459 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lo, W.T. et al., Structural basis of phosphatidylinositol 3-kinase C2 alpha function. Nat.Struct.Mol.Biol. (2022)

Release Date

2022-03-09

Peptides

Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha,Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha,Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha