SMTL ID : 7bi9.1

PI3KC2a core in complex with PIK90

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x 090: N-(2,3-DIHYDRO-7,8-DIMETHOXYIMIDAZO[1,2-C] QUINAZOLIN-5-YL)NICOTINAMIDE(Non-covalent)

090.1: 15 residues within 4Å: Chain A: F.622, M.646, K.648, E.651, D.656, F.682, V.694, E.695, L.696, V.697, S.700, D.701, M.767, I.777, D.778 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.696 Hydrogen bonds: A:V.697 pi-Stacking: A:F.682

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: D.526, H.529, R.654, R.689 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.526 EDO.3: 5 residues within 4Å: Chain A: L.450, E.480, K.668, I.669, K.672 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.480 EDO.4: 1 residues within 4Å: Chain A: K.814 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.814 EDO.5: 6 residues within 4Å: Chain A: L.312, T.313, C.314, F.350, P.351, P.353 No protein-ligand interaction detected (PLIP) EDO.6: 2 residues within 4Å: Chain A: Q.195, I.256 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lo, W.T. et al., Structural basis of phosphatidylinositol 3-kinase C2 alpha function. Nat.Struct.Mol.Biol. (2022)

Release Date

2022-03-09

Peptides

Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha,Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha,Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha

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