SMTL ID : 7bip.1

Crystal structure of monooxygenase RslO1 from Streptomyces bottropensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 1 residues within 4Å: Chain A: E.144 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.144, A:E.144, H2O.2, H2O.7 CA.2: 1 residues within 4Å: Chain A: E.23 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.23, A:E.23, H2O.1 CA.10: 2 residues within 4Å: Chain B: E.23 Ligands: PG4.15 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.23, B:E.23, H2O.16, H2O.17 CA.11: 1 residues within 4Å: Ligands: PEG.16 No protein-ligand interaction detected (PLIP) CA.12: 5 residues within 4Å: Chain B: N.6, K.41, S.231 Ligands: CA.13, XPE.14 No protein-ligand interaction detected (PLIP) CA.13: 6 residues within 4Å: Chain B: K.41, M.194, M.230, S.231 Ligands: CA.12, XPE.14 No protein-ligand interaction detected (PLIP)

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 3 residues within 4Å: Chain A: E.120, I.121, S.122 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.121 PEG.16: 4 residues within 4Å: Chain B: P.168, H.169, R.171 Ligands: CA.11 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.171, B:R.171 PEG.17: 5 residues within 4Å: Chain A: H.84 Chain B: F.82, I.121, R.129, H.153 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.129, B:R.129 Water bridges: B:H.84, A:K.87

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: A.66, R.67, T.68, R.69 Chain B: R.67 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.67 Water bridges: B:R.67, B:R.67 EDO.5: 1 residues within 4Å: Chain A: G.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.248 EDO.6: 3 residues within 4Å: Chain A: E.23, E.24, R.27 No protein-ligand interaction detected (PLIP) EDO.7: 2 residues within 4Å: Chain A: N.233, A.254 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.233 Water bridges: A:Q.324 EDO.8: 1 residues within 4Å: Chain A: E.149 No protein-ligand interaction detected (PLIP) EDO.18: 4 residues within 4Å: Chain A: R.67 Chain B: A.66, R.67, R.69 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.67 Water bridges: B:T.68, A:R.67 EDO.19: 2 residues within 4Å: Chain B: L.35, G.36 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.35 EDO.20: 2 residues within 4Å: Chain A: S.17 Chain B: W.165 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:S.17 Hydrogen bonds: B:W.165 EDO.21: 5 residues within 4Å: Chain B: R.244, Q.245, Q.249, E.252, F.288 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.244, B:Q.249 Water bridges: B:D.289

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.9: 6 residues within 4Å: Chain B: M.1, T.224, E.225, R.313, D.318, Y.350 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:E.225 Water bridges: B:M.1, B:M.1, B:T.224, B:T.224 Salt bridges: B:E.225, B:E.225, B:D.318, B:D.318

1 x XPE: 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL(Non-covalent)

XPE.14: 21 residues within 4Å: Chain B: F.8, Y.50, G.76, A.77, F.111, A.175, M.194, V.196, S.198, I.199, S.231, N.233, S.251, E.252, A.254, N.255, D.287, F.288, A.291 Ligands: CA.12, CA.13 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.50, B:G.76, B:N.233, B:N.255 Water bridges: B:S.198, B:S.198

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.15: 5 residues within 4Å: Chain A: Q.100, W.165 Chain B: Q.20, E.23 Ligands: CA.10 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:E.23, A:Q.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alali, A. et al., Biosynthesis of the Tricyclic Aromatic Type II Polyketide Rishirilide: New Potential Third Ring Oxygenation after Three Cyclization Steps. Mol Biotechnol. (2021)

Release Date

2021-01-20

Peptides

Luciferase-like monooxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Luciferase-like monooxygenase