SMTL ID : 7bir.1

Inhibitor of MDM2-p53 Interaction

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: A.59, Q.60, Q.61, H.62 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.61, A:H.62 Water bridges: A:Q.60, A:Q.60, A:Q.61 Salt bridges: A:H.62 SO4.2: 1 residues within 4Å: Chain A: R.86 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.86, A:R.86 Salt bridges: A:R.86

1 x TUZ: 1-[[(1~{R})-2-[(5-chloranylpyridin-2-yl)methyl]-1-(4-chlorophenyl)-7-fluoranyl-3-oxidanylidene-5-(2-oxidanylpropan-2-yl)isoindol-1-yl]oxymethyl]cyclopropane-1-carboxamide(Non-covalent)

TUZ.3: 17 residues within 4Å: Chain A: L.43, F.44, L.46, G.47, Q.48, I.50, M.51, Y.56, Q.61, H.62, I.63, V.64, F.80, V.82, H.85, I.88, Y.89 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.43, A:L.46, A:I.50, A:I.50, A:V.82 Hydrogen bonds: A:Q.48, A:Q.48 Halogen bonds: A:G.47, A:H.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chessari, G. et al., Structure-Based Design of Potent and Orally Active Isoindolinone Inhibitors of MDM2-p53 Protein-Protein Interaction. J.Med.Chem. (2021)

Release Date

2021-04-07

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase Mdm2

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