SMTL ID : 7bj0.1

Inhibitor of MDM2-p53 Interaction

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x TVH: (3~{R})-4-chloranyl-3-(4-chlorophenyl)-3-[[1-(hydroxymethyl)cyclopropyl]methoxy]-2-[(4-nitrophenyl)methyl]isoindol-1-one(Non-covalent)

TVH.1: 13 residues within 4Å: Chain A: L.43, F.44, L.46, G.47, Q.48, I.50, M.51, Y.56 Chain B: F.80, V.82, H.85, I.88, Y.89 11 PLIP interactions: 9 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.43, A:L.43, A:L.43, A:L.46, A:I.50, B:V.82, B:V.82 Hydrogen bonds: A:F.44 Water bridges: A:Q.13 pi-Stacking: A:Y.56 Halogen bonds: A:G.47 TVH.2: 15 residues within 4Å: Chain A: V.64, F.80, V.82, H.85, I.88, Y.89 Chain B: S.6, L.43, F.44, L.46, G.47, Q.48, I.50, M.51, Y.56 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.43, B:L.43, B:L.46, B:I.50, A:V.82 Hydrogen bonds: B:S.6, B:F.44 pi-Stacking: B:Y.56 Halogen bonds: B:G.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chessari, G. et al., Structure-Based Design of Potent and Orally Active Isoindolinone Inhibitors of MDM2-p53 Protein-Protein Interaction. J.Med.Chem. (2021)

Release Date

2021-04-07

Peptides

E3 ubiquitin-protein ligase Mdm2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase Mdm2