SMTL ID : 7bkp.1

CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ATP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: C.907, C.910, M.912, C.962, C.964, Q.966, W.968 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.907, A:C.910, A:C.962, A:C.964

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 13 residues within 4Å: Chain A: Q.308, L.309, R.310, Q.313, T.332, G.333, S.334, G.335, K.336, T.337, R.338, R.822 Ligands: MG.3 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:R.310, A:R.310, A:Q.313, A:Q.313, A:G.333, A:S.334, A:G.335, A:K.336, A:T.337, A:T.337, A:T.337, A:R.822 Salt bridges: A:K.336, A:K.336 pi-Cation interactions: A:R.310, A:R.310, A:R.338

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: K.336, T.337 Ligands: ATP.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, Q. et al., MDA5 disease variant M854K prevents ATP-dependent structural discrimination of viral and cellular RNA. Nat Commun (2021)

Release Date

2021-11-17

Peptides

Interferon-induced helicase C domain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Interferon-induced helicase C domain-containing protein 1

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