SMTL ID : 7bmg.1

Inhibitor of MDM2-p53 Interaction

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: K.40, E.41, F.44 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.40 EDO.2: 4 residues within 4Å: Chain A: A.59, Q.60, Q.61, H.62 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.59, A:Q.61, A:H.62, A:H.62 Water bridges: A:Q.61, A:I.63 EDO.3: 3 residues within 4Å: Chain A: K.34, D.35, T.36 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.35, A:T.36, A:T.36

1 x U3Z: (3~{R})-3-(4-chlorophenyl)-2-[(4-ethynylphenyl)methyl]-3-[[1-(hydroxymethyl)cyclopropyl]methoxy]-6-(2-oxidanylpropan-2-yl)isoindol-1-one(Non-covalent)

U3Z.4: 14 residues within 4Å: Chain A: L.43, F.44, L.46, G.47, Q.48, I.50, M.51, Q.61, H.62, I.63, V.82, H.85, I.88, Y.89 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.43, A:L.46, A:I.50, A:I.50, A:V.82, A:H.85, A:I.88, A:Y.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chessari, G. et al., Structure-Based Design of Potent and Orally Active Isoindolinone Inhibitors of MDM2-p53 Protein-Protein Interaction. J.Med.Chem. (2021)

Release Date

2021-04-07

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase Mdm2

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