SMTL ID : 7bo1.1

Notum Fragment_274 [(4-fluorophenyl)amino]thiourea

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.3: 3 residues within 4Å: Chain A: R.295, K.326, V.360 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.360 Water bridges: A:K.326, A:K.326 Salt bridges: A:R.295, A:K.326 SO4.4: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.122, A:Y.220 Water bridges: A:R.56, A:Y.123 Salt bridges: A:R.56 SO4.5: 5 residues within 4Å: Chain A: R.317, H.319, T.376, H.377 Ligands: U5Z.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.319, A:H.377 Salt bridges: A:R.317, A:H.377 SO4.6: 3 residues within 4Å: Chain A: Y.197, R.198, L.283 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.197 Salt bridges: A:R.198 SO4.7: 4 residues within 4Å: Chain A: R.167, V.225, E.227, R.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.227 Salt bridges: A:R.167, A:R.230

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: Q.324, G.327, T.328, S.329, R.332 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.327, A:S.329 Water bridges: A:G.327, A:T.328

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 5 residues within 4Å: Chain A: R.13, L.34, K.35, E.36, R.141 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.13, A:E.36, A:E.36, A:E.36, A:R.141

3 x U5Z: 1-[(4-fluorophenyl)amino]thiourea(Non-covalent)

U5Z.9: 13 residues within 4Å: Chain A: W.260, I.314, R.317, H.319, W.320, D.322, V.323, P.373, T.374, G.375, T.376, H.377 Ligands: SO4.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:H.319, A:D.322, A:P.373 Hydrogen bonds: A:D.322, A:D.322, A:T.374, A:G.375 U5Z.10: 3 residues within 4Å: Chain A: T.268, N.271, H.273 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.268 Hydrogen bonds: A:T.268, A:N.271 U5Z.11: 5 residues within 4Å: Chain A: D.193, N.194, K.195, P.210, T.211 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.193, A:N.194, A:P.210, A:P.210, A:T.211

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.12: 3 residues within 4Å: Chain A: S.40, R.41, R.42 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.41, A:R.42 DMS.13: 3 residues within 4Å: Chain A: L.175, G.176, Y.177 No protein-ligand interaction detected (PLIP) DMS.14: 6 residues within 4Å: Chain A: R.42, Y.94, W.95, W.96, N.97, A.98 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:W.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Notum Fragment Screen. To Be Published

Release Date

2022-03-02

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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