SMTL ID : 7bp5.1

Structural insights into nucleosome reorganization by NAP1-RELATED PROTEIN 1 (NRP1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ASN- ASP- PRO- ASP- TYR: ASN-ASP-PRO-ASP-TYR(Non-covalent)

ASN-ASP-PRO-ASP-TYR.1: 11 residues within 4Å: Chain A: R.66, P.69 Chain B: K.12, I.13, F.16, I.28, S.29, S.30, K.31, M.33 Ligands: GOL.2 12 PLIP interactions: 8 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:K.12, B:F.16, B:F.16 Hydrogen bonds: B:I.28, B:S.29, B:S.30, B:K.31, A:R.66, A:R.66 Salt bridges: B:K.31, A:R.66, A:R.66

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain B: T.10, Y.11, K.12, I.13 Ligands: ASN-ASP-PRO-ASP-TYR.1 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.10, B:K.12, B:I.13 Water bridges: B:K.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, Q. et al., NAP1-Related Protein 1 (NRP1) has multiple interaction modes for chaperoning histones H2A-H2B. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-11-11

Peptides

Histone H2A.6: A
Histone H2B.1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histone H2A.6

Histone H2B.1

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