SMTL ID : 7bqu.1

Cereblon in complex with SALL4 and (S)-thalidomide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x EF2: S-Thalidomide(Non-covalent)

EF2.1: 16 residues within 4Å: Chain A: N.39, P.40, H.41, E.65, H.66, S.67, W.68, W.74, W.88, F.90 Chain B: V.7, C.8, S.9, V.10, C.11, G.12 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:P.40, A:W.68, A:W.74, A:W.74, A:W.74, A:W.88, A:F.90, B:V.7 Hydrogen bonds: A:N.39, A:H.66, A:H.66, A:W.68

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.11, C.14, C.79, C.82 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.14, A:C.79, A:C.82 ZN.3: 4 residues within 4Å: Chain B: C.8, C.11, H.24, H.28 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.8, B:C.11, B:H.24, B:H.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Furihata, H. et al., Structural bases of IMiD selectivity that emerges by 5-hydroxythalidomide. Nat Commun (2020)

Release Date

2020-08-26

Peptides

Protein cereblon: A
Sal-like protein 4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein cereblon

Sal-like protein 4