SMTL ID : 7brl.1

Atrial Natriuretic Peptide Receptor complexed with Deletion mutant of rat Atrial Natriuretic Peptide[4-17,23]

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-2-1-mer

Ligands

2 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 5 residues within 4Å: Chain A: N.13, Y.16, A.57, G.58, V.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.157 NAG-NAG-MAN.3: 6 residues within 4Å: Chain B: N.13, Y.16, A.57, G.58, V.59, R.157 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.157, B:R.157, B:R.157

2 x NAG- NAG- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN.2: 3 residues within 4Å: Chain A: Y.363, N.395, S.398 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.363 NAG-NAG-MAN-MAN.4: 3 residues within 4Å: Chain B: Y.363, N.395, S.398 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 6 residues within 4Å: Chain A: P.10, W.18, S.53, P.84, G.85, C.86 Ligand excluded by PLIP CL.6: 8 residues within 4Å: Chain B: P.10, W.18, S.53, C.60, P.84, G.85, C.86, S.89 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ogawa, H., Structural insight into hormone-recognition and transmembrane signaling by the atrial natriuretic peptide receptor. To Be Published

Release Date

2021-03-31

Peptides

Atrial natriuretic peptide receptor 1: AB
Natriuretic peptides A: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
L

Atrial natriuretic peptide receptor 1

Natriuretic peptides A

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