SMTL ID : 7bsx.3 (3 other biounits)

SDR protein NapW-NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 31 residues within 4Å: Chain A: G.41, T.43, R.44, G.45, A.46, G.47, G.65, R.66, T.67, S.73, Y.75, T.100, D.101, H.102, L.103, D.128, V.129, W.130, G.131, L.156, T.160, M.183, T.184, D.185, Y.201, K.205, T.230, P.231, G.232, W.233, M.234 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:D.185, A:P.231 Hydrogen bonds: A:R.44, A:R.44, A:A.46, A:G.47, A:R.66, A:R.66, A:T.67, A:T.67, A:S.73, A:Y.75, A:Y.75, A:D.101, A:H.102, A:L.103, A:D.128, A:W.130, A:W.130, A:G.131, A:M.183, A:G.232, A:M.234 Water bridges: A:K.205 Salt bridges: A:R.44, A:R.66 pi-Cation interactions: A:R.66 NAP.2: 28 residues within 4Å: Chain B: G.41, T.43, R.44, G.45, A.46, G.47, G.65, R.66, T.67, S.73, Y.75, T.100, D.101, H.102, L.103, D.128, V.129, W.130, G.131, L.156, M.183, T.184, D.185, Y.201, K.205, P.231, M.234, S.236 25 PLIP interactions: 25 interactions with chain B Hydrogen bonds: B:T.43, B:R.44, B:R.44, B:A.46, B:G.47, B:R.66, B:R.66, B:T.67, B:S.73, B:D.101, B:D.101, B:H.102, B:L.103, B:W.130, B:W.130, B:G.131, B:M.183, B:Y.201, B:S.236, B:S.236 Water bridges: B:R.152, B:T.184 Salt bridges: B:R.44, B:R.66 pi-Cation interactions: B:R.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wen, W.H. et al., Reductive inactivation of the hemiaminal pharmacophore for resistance against tetrahydroisoquinoline antibiotics. Nat Commun (2021)

Release Date

2021-10-06

Peptides

Short chain dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
G

Short chain dehydrogenase

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