SMTL ID : 7bv3.1

Crystal structure of a ugt transferase from Siraitia grosvenorii in complex with UDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 15 residues within 4Å: Chain A: C.281, G.283, S.284, S.310, W.350, A.351, Q.353, H.368, G.370, W.371, N.372, S.373, E.376, Y.390, Q.393 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:S.284, A:S.310, A:A.351, A:A.351, A:Q.353, A:Q.353, A:N.372, A:N.372, A:S.373, A:E.376, A:Y.390, A:Q.393 Water bridges: A:S.284, A:S.284, A:V.354, A:W.371, A:W.371, A:W.371, A:E.376 Salt bridges: A:H.368, A:H.368 pi-Stacking: A:W.350 UDP.2: 15 residues within 4Å: Chain B: I.12, C.281, G.283, S.284, W.350, A.351, Q.353, H.368, G.370, W.371, N.372, S.373, E.376, Y.390, Q.393 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:S.284, B:S.310, B:A.351, B:A.351, B:Q.353, B:Q.353, B:N.372, B:N.372, B:S.373, B:E.376, B:Y.390, B:Q.393 Water bridges: B:S.284, B:S.284, B:V.354, B:W.371, B:E.376 Salt bridges: B:H.368, B:H.368 pi-Stacking: B:W.350

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Near-perfect control of the regioselective glucosylation enabled by rational design of glycosyltransferases. Green Synth Catal (2021)

Release Date

2021-03-03

Peptides

Glycosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycosyltransferase