SMTL ID : 7bvd.1

Anthranilate synthase component I (TrpE)[Mycolicibacterium smegmatis]

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.1: 11 residues within 4Å: Chain A: V.271, T.430, L.431, Y.454, I.473, R.474, A.487, G.488, G.489, G.490, K.507 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:T.430, A:L.431, A:L.431, A:I.473 Hydrogen bonds: A:Y.454, A:G.488 Water bridges: A:R.474 Salt bridges: A:K.507 pi-Cation interactions: A:K.507 BEZ.7: 11 residues within 4Å: Chain B: V.271, T.430, L.431, Y.454, I.473, R.474, A.487, G.488, G.489, G.490, K.507 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.431, B:I.473, B:K.507 Hydrogen bonds: B:Y.454, B:Y.454, B:G.488 Salt bridges: B:K.507 pi-Cation interactions: B:K.507

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: K.362, E.363, E.366, G.490, E.503 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:E.363, H2O.1, H2O.4, H2O.5, H2O.6, H2O.7 MG.3: 2 residues within 4Å: Chain A: R.375, N.376 No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Chain B: G.490 No protein-ligand interaction detected (PLIP)

1 x PYR: PYRUVIC ACID(Non-covalent)

PYR.4: 7 residues within 4Å: Chain A: P.113, S.114, G.115, G.116, D.120, A.121, A.124 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.117

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: G.265, E.266, A.267, F.268, P.435 2 PLIP interactions: 2 interactions with chain A Water bridges: A:I.262, A:G.265 GOL.6: 13 residues within 4Å: Chain A: L.167, L.169, R.275, R.451, G.452, L.453, Y.454, T.475, A.476, L.477, Y.484, V.485, Q.486 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.453, A:Y.454, A:T.475, A:Q.486 GOL.9: 6 residues within 4Å: Chain B: D.166, L.167, R.275, E.277, T.482, Y.484 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.166, B:R.275 Water bridges: B:R.275 GOL.10: 11 residues within 4Å: Chain B: L.72, E.73, S.74, S.82, W.84, S.85, F.86, P.298, Y.299, M.300, Y.460 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.74, B:S.82 Water bridges: B:E.73, B:S.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., Structure of subunit I of the anthranilate synthase complex of Mycolicibacterium smegmatis. Biochem.Biophys.Res.Commun. (2020)

Release Date

2020-05-06

Peptides

Anthranilate synthase component 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Anthranilate synthase component 1