SMTL ID : 7bzj.1

The Discovery of Benzhydrol-Oxaborole Hybrid Derivatives as Leucyl-tRNA Synthetase Inhibitors

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FGX: [(1~{R},5~{R},6~{S},8~{R})-8-(6-aminopurin-9-yl)-4'-[(~{R})-oxidanyl-[4-(2-oxidanylidenepropylsulfanyl)phenyl]methyl]spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,7'-7-boranuidabicyclo[4.3.0]nona-1(6),2,4-triene]-6-yl]methoxy-tris(oxidanyl)phosphanium(Non-covalent)

FGX.1: 19 residues within 4Å: Chain A: T.2, F.20, T.21, T.22, R.23, T.26, Y.101, V.102, L.103, Y.106, G.109, A.110, V.111, M.112, V.114, H.117, D.118, T.147, K.163 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:R.23, A:R.23, A:V.114, A:D.118 Hydrogen bonds: A:T.21, A:T.22, A:T.22, A:T.22, A:L.103, A:L.103, A:G.109 Water bridges: A:T.108 pi-Stacking: A:Y.106 pi-Cation interactions: A:R.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hao, G. et al., Discovery of benzhydrol-oxaborole derivatives as Streptococcus pneumoniae leucyl-tRNA synthetase inhibitors. Bioorg.Med.Chem. (2021)

Release Date

2020-12-09

Peptides

Leucine--tRNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucine--tRNA ligase

Related Entries With Identical Sequence