SMTL ID : 7bzm.1 (1 other biounit)

Crystal structure of rice Os3BGlu7 with glucoimidazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x GIM: GLUCOIMIDAZOLE(Non-covalent)

GIM.1: 13 residues within 4Å: Chain A: Q.34, H.135, Y.136, N.180, E.181, N.318, Y.320, W.363, E.391, W.438, E.445, W.446, F.454 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.34, A:H.135, A:N.180, A:E.181, A:E.181, A:N.318, A:W.446 Water bridges: A:S.361, A:S.361, A:N.443

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 9 residues within 4Å: Chain A: G.283, H.284, Y.285, Q.290, P.298, K.299, F.300, P.302, A.305 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.285, A:F.300

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 2 residues within 4Å: Chain A: D.70, H.73 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.70, A:D.70, A:H.73

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: T.168, N.171, R.172 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.171 Water bridges: A:T.168, A:N.171, A:R.172 Salt bridges: A:R.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nutho, B. et al., Structural Basis of Specific Glucoimidazole and Mannoimidazole Binding by Os3BGlu7. Biomolecules (2020)

Release Date

2020-07-08

Peptides

Beta-glucosidase 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-glucosidase 7

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