SMTL ID : 7c00.1

Crystal structure of the SRCR domain of human SCARA5.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.10, R.60, F.61, G.62 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.10, A:R.60 Water bridges: A:R.18, A:Q.63

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: D.32, D.33, E.99 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.32, A:D.33, A:E.99, H2O.2, H2O.3 CA.3: 7 residues within 4Å: Chain A: G.34, W.35, D.36, D.39, V.73, A.74, C.75 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.34, A:D.36, A:D.39, A:V.73, H2O.3 CA.4: 4 residues within 4Å: Chain A: D.33, D.71, D.72, N.94 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.33, A:D.71, A:D.71, A:D.72, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, B. et al., Interactions of ferritin with scavenger receptor class A members. J.Biol.Chem. (2020)

Release Date

2020-09-16

Peptides

Scavenger receptor class A member 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Scavenger receptor class A member 5