SMTL ID : 7c4i.1

High resolution structure of BRPF1 Bromo Domain from Biortus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

monomer

Ligands

4 x K: POTASSIUM ION(Non-covalent)

K.1: 2 residues within 4Å: Chain A: L.97, R.114 No protein-ligand interaction detected (PLIP) K.2: 2 residues within 4Å: Chain A: Y.107, R.108 No protein-ligand interaction detected (PLIP) K.3: 3 residues within 4Å: Chain A: Y.57, C.96, N.100 No protein-ligand interaction detected (PLIP) K.4: 4 residues within 4Å: Chain A: Q.37, D.40, N.43 Ligands: GOL.8 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Q.37, A:D.40, H2O.2, H2O.5

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: E.86, G.118, L.121, R.122, R.125 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.125 Water bridges: A:E.86, A:N.90 GOL.6: 4 residues within 4Å: Chain A: R.122, R.125, R.126, E.129 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.122, A:R.122, A:R.126, A:E.129 GOL.7: 5 residues within 4Å: Chain A: M.20, F.82, R.125, A.128, E.129 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.17, A:G.17, A:R.125, A:E.129 GOL.8: 4 residues within 4Å: Chain A: Q.37, E.38, N.43 Ligands: K.4 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.38 GOL.9: 3 residues within 4Å: Chain A: E.47, P.48, F.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.47, A:E.47 GOL.10: 4 residues within 4Å: Chain A: G.17, M.20, L.80, N.81 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.17 Water bridges: A:L.80, A:N.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., High resolution structure of BRPF1 Bromo Domain from Biortus. To Be Published

Release Date

2020-07-08

Peptides

Peregrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peregrin