SMTL ID : 7c4s.1 (1 other biounit)

Sphingosine-1-phosphate receptor 3 with a natural ligand.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x S1P: (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate(Non-covalent)

S1P.1: 15 residues within 4Å: Chain C: Y.22, E.37, N.95, S.99, G.100, T.103, R.114, E.115, F.119, L.122, T.126, L.168, I.203, W.256, I.284 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:F.119, C:F.119, C:F.119, C:L.122, C:L.122, C:I.203, C:W.256, C:I.284 Hydrogen bonds: C:Y.22, C:E.37, C:S.99, C:G.100, C:R.114, C:E.115 Salt bridges: C:R.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maeda, S. et al., Endogenous agonist-bound S1PR3 structure reveals determinants of G protein-subtype bias. Sci Adv (2021)

Release Date

2021-06-09

Peptides

Antibody Fab fragment light chain: A
Antibody Fab fragment heavy chain: B
Sphingosine 1-phosphate receptor 3: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
A

Membrane

We predict this structure to be a membrane protein.
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Antibody Fab fragment light chain

Antibody Fab fragment heavy chain

Sphingosine 1-phosphate receptor 3

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