SMTL ID : 7c77.1

Cryo-EM structure of mouse TLR3 in complex with UNC93B1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: N.414, T.416, K.417, I.436, D.438 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.417

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 3 residues within 4Å: Chain A: N.425, S.449, Q.451 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain A: N.399, W.430 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain A: P.481, S.482, N.508 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 3 residues within 4Å: Chain B: H.252, N.256, N.272 No protein-ligand interaction detected (PLIP)

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 5 residues within 4Å: Chain A: S.39, N.58, T.60, I.80, D.82 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.80 Hydrogen bonds: A:S.39, A:N.58, A:D.82, A:D.82 NAG.7: 4 residues within 4Å: Chain A: P.100, L.101, T.124, N.125 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.124, A:T.124 NAG.8: 2 residues within 4Å: Chain A: V.169, N.197 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.197 NAG.9: 2 residues within 4Å: Chain A: N.248, W.274 No protein-ligand interaction detected (PLIP) NAG.10: 4 residues within 4Å: Chain A: R.201, A.226, N.253, Q.279 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.226 Hydrogen bonds: A:N.253 NAG.11: 2 residues within 4Å: Chain A: G.291, N.292 No protein-ligand interaction detected (PLIP) NAG.12: 3 residues within 4Å: Chain A: N.639, S.640, N.668 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.639 Hydrogen bonds: A:N.668 NAG.13: 1 residues within 4Å: Chain A: N.663 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.663 NAG.14: 1 residues within 4Å: Chain B: N.251 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ishida, H. et al., Cryo-EM structures of Toll-like receptors in complex with UNC93B1. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-01-06

Peptides

Toll-like receptor 3: A
Protein unc-93 homolog B1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Toll-like receptor 3

Protein unc-93 homolog B1