SMTL ID : 7c87.1

Peroxiredoxin from Aeropyrum pernix K1 (ApPrx) C50S/F80C/C207S/C213S mutant (ApPrx*F80C)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-10-mer

Ligands

10 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 10 residues within 4Å: Chain A: P.43, T.47, P.48, V.49, S.50, R.126, M.145 Chain B: A.170, P.188, P.189 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.43 Hydrogen bonds: A:T.47, A:V.49, A:S.50, A:S.50 Salt bridges: A:R.126 CIT.2: 10 residues within 4Å: Chain A: A.170, P.188, P.189 Chain B: P.43, T.47, P.48, V.49, S.50, R.126, M.145 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:P.43 Hydrogen bonds: B:T.47, B:V.49, B:S.50 Salt bridges: B:R.126 CIT.3: 11 residues within 4Å: Chain C: P.43, T.47, P.48, V.49, S.50, R.126, M.145 Chain D: A.170, I.186, P.188, P.189 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:P.43 Hydrogen bonds: C:T.47, C:V.49, C:S.50 Salt bridges: C:R.126 CIT.4: 10 residues within 4Å: Chain C: A.170, P.188, P.189 Chain D: P.43, T.47, P.48, V.49, S.50, R.126, M.145 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:P.43 Hydrogen bonds: D:T.47, D:V.49, D:S.50, D:S.50 Salt bridges: D:R.126 CIT.5: 10 residues within 4Å: Chain E: T.47, P.48, V.49, S.50, R.126, M.145, E.146 Chain F: A.170, P.188, P.189 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:V.49, E:S.50 Salt bridges: E:R.126 Hydrophobic interactions: F:A.170 CIT.6: 10 residues within 4Å: Chain E: A.170, P.188, P.189 Chain F: P.43, T.47, P.48, V.49, S.50, R.126, M.145 5 PLIP interactions: 5 interactions with chain F Hydrophobic interactions: F:P.43 Hydrogen bonds: F:V.49, F:S.50, F:S.50 Salt bridges: F:R.126 CIT.7: 10 residues within 4Å: Chain G: P.43, T.47, P.48, V.49, S.50, R.126, M.145 Chain H: A.170, P.188, P.189 6 PLIP interactions: 6 interactions with chain G Hydrophobic interactions: G:P.43 Hydrogen bonds: G:T.47, G:V.49, G:S.50, G:S.50 Salt bridges: G:R.126 CIT.8: 10 residues within 4Å: Chain G: A.170, P.188, P.189 Chain H: P.43, T.47, P.48, V.49, S.50, R.126, M.145 5 PLIP interactions: 5 interactions with chain H Hydrophobic interactions: H:P.43 Hydrogen bonds: H:T.47, H:V.49, H:S.50 Salt bridges: H:R.126 CIT.9: 10 residues within 4Å: Chain I: P.43, T.47, P.48, V.49, S.50, R.126, M.145 Chain J: A.170, P.188, P.189 4 PLIP interactions: 4 interactions with chain I Hydrophobic interactions: I:P.43 Hydrogen bonds: I:V.49, I:S.50 Salt bridges: I:R.126 CIT.10: 10 residues within 4Å: Chain I: A.170, P.188, P.189 Chain J: P.43, T.47, P.48, V.49, S.50, R.126, M.145 4 PLIP interactions: 4 interactions with chain J Hydrophobic interactions: J:P.43 Hydrogen bonds: J:V.49, J:S.50 Salt bridges: J:R.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Himiyama, T. et al., Rebuilding Ring-Type Assembly of Peroxiredoxin by Chemical Modification. Bioconjug.Chem. (2021)

Release Date

2020-12-30

Peptides

Peroxiredoxin: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Peroxiredoxin

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