- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x FL3: 1-naphthalen-2-ylethanone(Covalent)
- 10 x CIT: CITRIC ACID(Non-functional Binders)
CIT.2: 12 residues within 4Å:- Chain A: P.43, T.47, P.48, V.49, S.50, R.126, M.145
- Chain B: A.170, I.186, P.188, P.189
- Ligands: FL3.11
6 PLIP interactions:1 interactions with chain B, 5 interactions with chain A- Water bridges: B:P.189
- Hydrophobic interactions: A:P.43
- Hydrogen bonds: A:T.47, A:V.49, A:S.50
- Salt bridges: A:R.126
CIT.4: 12 residues within 4Å:- Chain A: A.170, I.186, P.188, P.189
- Chain B: P.43, T.47, P.48, V.49, S.50, R.126, M.145
- Ligands: FL3.5
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:P.43
- Hydrogen bonds: B:V.49, B:S.50, B:S.50
- Salt bridges: B:R.126
CIT.6: 12 residues within 4Å:- Chain C: P.43, T.47, P.48, V.49, S.50, R.126, M.145
- Chain D: A.170, I.186, P.188, P.189
- Ligands: FL3.3
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:P.43
- Hydrogen bonds: C:T.47, C:V.49, C:S.50
- Salt bridges: C:R.126
CIT.8: 11 residues within 4Å:- Chain C: A.170, P.188, P.189
- Chain D: P.43, T.47, P.48, V.49, S.50, R.126, M.145
- Ligands: FL3.19
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:P.43
- Hydrogen bonds: D:T.47, D:V.49, D:S.50, D:S.50
- Salt bridges: D:R.126
CIT.10: 12 residues within 4Å:- Chain E: P.43, T.47, P.48, V.49, S.50, R.126, M.145
- Chain F: A.170, I.186, P.188, P.189
- Ligands: FL3.15
5 PLIP interactions:5 interactions with chain E- Hydrophobic interactions: E:P.43
- Hydrogen bonds: E:T.47, E:V.49, E:S.50
- Salt bridges: E:R.126
CIT.12: 11 residues within 4Å:- Chain E: A.170, P.188, P.189
- Chain F: P.43, T.47, P.48, V.49, S.50, R.126, M.145
- Ligands: FL3.1
6 PLIP interactions:6 interactions with chain F- Hydrophobic interactions: F:P.43
- Hydrogen bonds: F:T.47, F:V.49, F:S.50, F:S.50
- Salt bridges: F:R.126
CIT.14: 12 residues within 4Å:- Chain G: P.43, T.47, P.48, V.49, S.50, R.126, M.145
- Chain H: A.170, I.186, P.188, P.189
- Ligands: FL3.17
4 PLIP interactions:4 interactions with chain G- Hydrophobic interactions: G:P.43
- Hydrogen bonds: G:V.49, G:S.50
- Salt bridges: G:R.126
CIT.16: 11 residues within 4Å:- Chain G: A.170, P.188, P.189
- Chain H: P.43, T.47, P.48, V.49, S.50, R.126, M.145
- Ligands: FL3.9
5 PLIP interactions:5 interactions with chain H- Hydrophobic interactions: H:P.43
- Hydrogen bonds: H:V.49, H:S.50, H:S.50
- Salt bridges: H:R.126
CIT.18: 11 residues within 4Å:- Chain I: P.43, T.47, P.48, V.49, S.50, R.126, M.145
- Chain J: A.170, P.188, P.189
- Ligands: FL3.13
4 PLIP interactions:4 interactions with chain I- Hydrophobic interactions: I:P.43
- Hydrogen bonds: I:V.49, I:S.50
- Salt bridges: I:R.126
CIT.20: 11 residues within 4Å:- Chain I: A.170, P.188, P.189
- Chain J: P.43, T.47, P.48, V.49, S.50, R.126, M.145
- Ligands: FL3.7
4 PLIP interactions:4 interactions with chain J- Hydrophobic interactions: J:P.43
- Hydrogen bonds: J:V.49, J:S.50
- Salt bridges: J:R.126
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Himiyama, T. et al., Rebuilding Ring-Type Assembly of Peroxiredoxin by Chemical Modification. Bioconjug.Chem. (2021)
- Release Date
- 2020-12-30
- Peptides
- Peroxiredoxin: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x FL3: 1-naphthalen-2-ylethanone(Covalent)
- 10 x CIT: CITRIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Himiyama, T. et al., Rebuilding Ring-Type Assembly of Peroxiredoxin by Chemical Modification. Bioconjug.Chem. (2021)
- Release Date
- 2020-12-30
- Peptides
- Peroxiredoxin: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
J