SMTL ID : 7c9q.1

Crystal structure of Human liver fructose-1,6-bisphoaphatase complex with Mg2+ and AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

homo-tetramer

Ligands

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 13 residues within 4Å: Chain A: V.18, E.21, G.22, A.25, G.27, T.28, G.29, E.30, L.31, T.32, K.113, Y.114, M.178 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.28, A:T.28, A:G.29, A:E.30, A:L.31, A:T.32, A:T.32, A:Y.114, A:Y.114 Water bridges: A:T.32 Salt bridges: A:K.113 AMP.3: 13 residues within 4Å: Chain B: V.18, E.21, G.22, A.25, G.27, T.28, G.29, E.30, L.31, T.32, K.113, Y.114, M.178 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:T.28, B:T.28, B:G.29, B:E.30, B:L.31, B:T.32, B:Y.114, B:Y.114 Water bridges: B:T.32, B:T.32 Salt bridges: B:K.113 AMP.5: 13 residues within 4Å: Chain C: V.18, E.21, G.22, A.25, G.27, T.28, G.29, E.30, L.31, T.32, K.113, Y.114, M.178 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:T.28, C:T.28, C:T.28, C:G.29, C:E.30, C:E.30, C:L.31, C:T.32, C:Y.114, C:Y.114, C:R.141 Water bridges: C:T.32 Salt bridges: C:K.113 AMP.7: 13 residues within 4Å: Chain D: V.18, E.21, G.22, A.25, G.27, T.28, G.29, E.30, L.31, T.32, K.113, Y.114, M.178 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:T.28, D:T.28, D:T.28, D:G.29, D:E.30, D:L.31, D:T.32, D:T.32, D:Y.114, D:Y.114 Water bridges: D:T.32 Salt bridges: D:K.113

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: E.98, E.99, D.119, L.121 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.98, A:E.99, A:D.119, A:L.121, H2O.2, H2O.6 MG.4: 4 residues within 4Å: Chain B: E.98, D.119, D.122, E.281 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.98, B:D.119, B:D.122, B:E.281 MG.6: 4 residues within 4Å: Chain C: E.98, D.119, D.122, E.281 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.98, C:D.119, C:D.122, C:E.281, H2O.19 MG.8: 4 residues within 4Å: Chain D: E.98, E.99, D.119, L.121 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.98, D:E.99, D:L.121, H2O.22, H2O.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Y. et al., Crystal structure of Human liver fructose-1,6-bisphoaphatase complex with Mg2+ and AMP. To Be Published

Release Date

2021-06-09

Peptides

Fructose-1,6-bisphosphatase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
B

Fructose-1,6-bisphosphatase 1

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