SMTL ID : 7cb8.2 (1 other biounit)

Structure of a FIC-domain protein from Mycobacterium marinum in complex with CDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)

CDP.1: 16 residues within 4Å: Chain A: E.94, I.172, L.183, E.222, H.225, D.229, G.230, N.231, G.232, R.233, R.236, Y.267, F.268, L.271, N.272, R.275 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.268 Hydrogen bonds: A:E.94, A:E.222, A:G.230, A:N.231, A:N.231, A:G.232, A:R.236, A:R.236, A:Y.267, A:N.272, A:N.272, A:R.275, A:R.275 Water bridges: A:E.94, A:E.94, A:R.233, A:R.233 Salt bridges: A:H.225, A:R.233

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: L.75, G.77, L.78, S.79, T.80 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.77, A:L.78, A:S.79, A:T.80, A:T.80, A:T.80 EDO.3: 4 residues within 4Å: Chain A: G.24, T.25, R.26, R.29 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.26, A:R.29 EDO.4: 3 residues within 4Å: Chain A: S.322, A.323, S.352 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.323, A:S.352, A:S.352 EDO.5: 4 residues within 4Å: Chain A: E.58, M.61, S.62, S.65 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.62, A:S.65, A:S.65 EDO.6: 5 residues within 4Å: Chain A: H.263, R.264, E.265, R.266 Ligands: ACT.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.263, A:E.265, A:R.266

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 3 residues within 4Å: Chain A: T.370, N.371, K.373 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.371, A:N.371 Salt bridges: A:K.373 SO4.8: 3 residues within 4Å: Chain A: T.25, A.27, R.180 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.25 Water bridges: A:R.180, A:R.180 Salt bridges: A:R.180

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.9: 6 residues within 4Å: Chain A: V.261, A.262, H.263, R.264, E.265 Ligands: EDO.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.264 Hydrogen bonds: A:R.264, A:E.265 Water bridges: A:R.95 ACT.10: 6 residues within 4Å: Chain A: E.86, S.90, A.122, L.126, R.233, A.237 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.86 Hydrogen bonds: A:S.90, A:S.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, S. et al., Structure of of a FIC-domain protein from Mycobacterium marinum. To Be Published

Release Date

2021-08-18

Peptides

Fic-domain containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Fic-domain containing protein

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