SMTL ID : 7cbf.1

Crystal structure of benzophenone synthase from Garcinia mangostana L. pericarps reveals basis for substrate specificity and catalysis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 3 residues within 4Å: Chain A: G.307, R.308, A.309 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.308, A:A.309 IMD.10: 4 residues within 4Å: Chain B: T.101, P.104, S.144, L.148 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.101

10 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 3 residues within 4Å: Chain A: N.81, G.83, S.94 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: A.242, A.243 Ligand excluded by PLIP IOD.4: 4 residues within 4Å: Chain A: L.50, D.52, L.53, E.204 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: N.30, T.74, E.75 Ligand excluded by PLIP IOD.6: 1 residues within 4Å: Chain A: E.35 Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain B: D.321, E.323 Ligand excluded by PLIP IOD.12: 2 residues within 4Å: Chain B: R.235, R.351 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain B: A.242, A.243 Ligand excluded by PLIP IOD.14: 3 residues within 4Å: Chain B: P.274, G.313, K.317 Ligand excluded by PLIP IOD.15: 3 residues within 4Å: Chain B: N.81, G.83, S.94 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 2 residues within 4Å: Chain A: K.63, R.308 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.308 Water bridges: A:R.308 GOL.8: 8 residues within 4Å: Chain A: T.133, S.134, G.164, C.165, E.193, N.194, T.198, G.339 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.134, A:E.193 Water bridges: A:C.165 GOL.9: 5 residues within 4Å: Chain A: V.44, N.46, L.78, K.79, A.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.46 GOL.16: 2 residues within 4Å: Chain B: P.28, E.102 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.102 Water bridges: B:N.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Songsiriritthigul, C. et al., Crystal structure of benzophenone synthase from Garcinia mangostana L. pericarps reveals basis for substrate specificity and catalysis. Acta Crystallogr.,Sect.F (2020)

Release Date

2020-12-09

Peptides

2,4,6-trihydroxybenzophenone synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

2,4,6-trihydroxybenzophenone synthase