- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.59 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
ZN.2: 5 residues within 4Å:- Chain A: H.100, H.136, D.137, D.254
- Ligands: MG.1
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.100, A:H.136, A:D.137, A:D.254, H2O.2, H2O.2
ZN.14: 5 residues within 4Å:- Chain B: H.100, H.136, D.137, D.254
- Ligands: MG.13
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.100, B:H.136, B:D.137, B:D.254, H2O.10, H2O.12
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 4 residues within 4Å:- Chain A: K.198, I.201, D.202
- Chain B: N.160
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:K.198, A:D.202
- Water bridges: A:D.202, B:D.161
EDO.5: 5 residues within 4Å:- Chain A: T.122, L.124, E.125, S.195, M.199
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.122, A:S.195, A:S.195
EDO.6: 5 residues within 4Å:- Chain A: N.51, A.91, N.97, N.98, I.99
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.51, A:N.98
- Water bridges: A:N.98, A:N.98, A:R.271
EDO.7: 4 residues within 4Å:- Chain A: H.90, D.92, V.93, P.141
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.92
EDO.8: 4 residues within 4Å:- Chain A: L.205, A.206, K.211, Q.247
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.247
EDO.9: 4 residues within 4Å:- Chain A: V.110, S.113, T.114, D.327
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.113, A:T.114
EDO.10: 3 residues within 4Å:- Chain A: L.262, D.337, N.338
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.338
EDO.12: 5 residues within 4Å:- Chain A: N.160, S.162
- Chain B: K.198, I.201, D.202
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Water bridges: A:D.161, A:S.162
- Hydrogen bonds: B:D.202
EDO.15: 5 residues within 4Å:- Chain B: A.91, D.92, V.93, A.94, E.274
No protein-ligand interaction detected (PLIP)EDO.16: 8 residues within 4Å:- Chain B: V.110, L.111, T.114, W.320, V.324, D.327, A.328, I.331
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:V.110, B:W.320
EDO.17: 4 residues within 4Å:- Chain B: E.154, L.155, M.158, H.168
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.154
- Water bridges: B:H.168
- 2 x A9L: N-{2-[(1S)-1-(3-ethoxy-4-methoxyphenyl)-2-(methylsulfonyl)ethyl]-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl}acetamide(Non-covalent)
A9L.11: 16 residues within 4Å:- Chain A: Y.95, H.96, S.144, M.209, D.254, L.255, N.257, W.268, T.269, I.272, F.276, Q.279, M.293, S.304, Q.305, F.308
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:I.272, A:I.272, A:F.276, A:F.308
- Hydrogen bonds: A:Q.305
- Water bridges: A:S.291
- pi-Stacking: A:F.308
A9L.18: 17 residues within 4Å:- Chain B: Y.95, H.96, S.144, M.209, D.254, L.255, N.257, W.268, T.269, I.272, F.276, Q.279, P.292, M.293, S.304, Q.305, F.308
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:F.276, B:F.276, B:F.308, B:F.308
- Hydrogen bonds: B:Q.305
- Water bridges: B:S.291
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, R. et al., Design, synthesis, and biological evaluation of tetrahydroisoquinolines derivatives as novel, selective PDE4 inhibitors for antipsoriasis treatment. Eur.J.Med.Chem. (2021)
- Release Date
- 2021-01-27
- Peptides
- cAMP-specific 3',5'-cyclic phosphodiesterase 4D: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.59 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x A9L: N-{2-[(1S)-1-(3-ethoxy-4-methoxyphenyl)-2-(methylsulfonyl)ethyl]-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl}acetamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, R. et al., Design, synthesis, and biological evaluation of tetrahydroisoquinolines derivatives as novel, selective PDE4 inhibitors for antipsoriasis treatment. Eur.J.Med.Chem. (2021)
- Release Date
- 2021-01-27
- Peptides
- cAMP-specific 3',5'-cyclic phosphodiesterase 4D: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B