SMTL ID : 7cd5.1

mAPE1-blunt-ended dsDNA product complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x DC- DG- DT- DA- DA- DT- DA- DC: DNA(5'-D(*CP*GP*TP*AP*AP*TP*AP*CP*G)-3')(Non-covalent)

DC-DG-DT-DA-DA-DT-DA-DC.1: 26 residues within 4Å: Chain A: Y.161, N.207, G.209, R.210 Chain B: D.103, G.104, L.105, R.106, A.107, K.111, K.131, K.136, E.159, G.160, R.210, Y.302, M.303, M.304 Ligands: DC-DG-DT-DA-DA-DT-DA-DC.2, DC-DG-DT-DA-DA-DT-DA-DC.2, DC-DG-DT-DA-DA-DT-DA-DC.2, DC-DG-DT-DA-DA-DT-DA-DC.2, DC-DG-DT-DA-DA-DT-DA-DC.2, DC-DG-DT-DA-DA-DT-DA-DC.2, DC-DG-DT-DA-DA-DT-DA-DC.2, DC-DG-DT-DA-DA-DT-DA-DC.2 Protein-ligand interaction information (PLIP) not available DC-DG-DT-DA-DA-DT-DA-DC.2: 26 residues within 4Å: Chain A: D.103, G.104, L.105, R.106, A.107, K.111, K.131, K.136, E.159, G.160, R.210, Y.302, M.303, M.304 Chain B: Y.161, N.207, G.209, R.210 Ligands: DC-DG-DT-DA-DA-DT-DA-DC.1, DC-DG-DT-DA-DA-DT-DA-DC.1, DC-DG-DT-DA-DA-DT-DA-DC.1, DC-DG-DT-DA-DA-DT-DA-DC.1, DC-DG-DT-DA-DA-DT-DA-DC.1, DC-DG-DT-DA-DA-DT-DA-DC.1, DC-DG-DT-DA-DA-DT-DA-DC.1, DC-DG-DT-DA-DA-DT-DA-DC.1 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, T.C. et al., APE1 distinguishes DNA substrates in exonucleolytic cleavage by induced space-filling. Nat Commun (2021)

Release Date

2021-01-13

Peptides

DNA-(apurinic or apyrimidinic site) endonuclease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DNA-(apurinic or apyrimidinic site) endonuclease