SMTL ID : 7cdx.1

Complex STRUCTURE OF A NOVEL VIRULENCE REGULATION FACTOR SghR with its effector sucrose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 14 residues within 4Å: Chain A: E.109, S.162, K.163, I.164, H.184, G.185, D.197, F.198, N.200, F.230, I.284, K.312, E.330, I.332 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.163, A:I.164, A:D.197, A:N.200, A:K.312, A:E.330, A:E.109, A:E.109, A:K.312, A:E.330 Water bridges: A:I.164, A:F.230, A:S.314, A:S.314 GLC-FRU.2: 14 residues within 4Å: Chain B: E.109, S.162, K.163, I.164, H.184, G.185, D.197, F.198, N.200, F.230, K.312, S.314, E.330, I.332 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.163, B:I.164, B:D.197, B:N.200, B:K.312, B:E.330, B:E.109, B:E.109, B:K.312, B:S.314, B:E.330 Water bridges: B:I.164, B:H.184, B:F.230, B:H.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ye, F. et al., Structural basis of a novel repressor, SghR, controllingAgrobacteriuminfection by cross-talking to plants. J.Biol.Chem. (2020)

Release Date

2020-07-15

Peptides

LacI-type transcription factor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

LacI-type transcription factor

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