SMTL ID : 7cgc.2 (3 other biounits)

Silver-bound E. coli Malate dehydrogenase (C113 and C251)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

4 x AG: SILVER ION(Non-covalent)

AG.1: 4 residues within 4Å: Chain A: D.71, C.113, L.242 Ligands: AG.2 No protein-ligand interaction detected (PLIP) AG.2: 6 residues within 4Å: Chain A: K.111, C.113, K.142, N.273, G.274 Ligands: AG.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.113 AG.3: 5 residues within 4Å: Chain A: I.151, P.172, V.173, C.251 Ligands: AG.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:V.173, A:C.251 AG.4: 2 residues within 4Å: Chain A: C.251 Ligands: AG.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.251, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Atomic differentiation of silver binding preference in protein targets: Escherichia coli malate dehydrogenase as a paradigm. Chem Sci (2020)

Release Date

2020-09-23

Peptides

Malate dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Malate dehydrogenase

Related Entries With Identical Sequence