SMTL ID : 7cgl.1

Crystal Structure of PUF-8 in Complex with PBE-RNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x U- G- U- A- C- A- U- A: PBE-5C (5'-R(P*UP*GP*UP*AP*CP*AP*UP*A)-3')(Non-covalent)

U-G-U-A-C-A-U-A.1: 36 residues within 4Å: Chain A: Q.44, R.48, Q.51, F.82, N.84, Y.85, Q.88, Y.118, C.120, R.121, Q.124, Q.153, N.154, C.156, R.157, Q.160, Y.193, R.196, Q.199, Q.228, Y.229, N.231, Y.232, Q.235, K.264, Y.265, S.267, N.268, E.271, Q.307, Y.308, N.310, Y.311, H.344, H.347, K.351 Protein-ligand interaction information (PLIP) not available

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: S.182, Q.216, K.219 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Z. et al., Structural recognition of the mRNA 3' UTR by PUF-8 restricts the lifespan of C. elegans. Nucleic Acids Res. (2021)

Release Date

2021-07-07

Peptides

PUM-HD domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PUM-HD domain-containing protein

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