SMTL ID : 7chl.1 (1 other biounit)

Crystal structure of hybrid Arabinose isomerase AI-10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-hexamer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: E.305, E.332, H.349, H.449 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.305, A:E.332, A:H.349, A:H.449 MN.3: 4 residues within 4Å: Chain B: E.305, E.332, H.349, H.449 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.305, B:E.305, B:E.332, B:H.349, B:H.449 MN.5: 4 residues within 4Å: Chain C: E.305, E.332, H.349, H.449 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.305, C:E.332, C:H.349, C:H.449 MN.7: 4 residues within 4Å: Chain D: E.305, E.332, H.349, H.449 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.305, D:E.332, D:H.349, D:H.449 MN.9: 2 residues within 4Å: Chain E: E.305, E.332 3 PLIP interactions: 2 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:E.305, E:E.332, H2O.1 MN.11: 4 residues within 4Å: Chain F: E.305, E.332, H.349, H.449 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:E.305, F:E.332, F:H.349, F:H.449, H2O.1

6 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: Y.208, F.265, D.268 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.268 NA.4: 3 residues within 4Å: Chain B: Y.208, D.268, G.269 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.268 NA.6: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.208, C:Y.208 NA.8: 1 residues within 4Å: Chain D: F.265 No protein-ligand interaction detected (PLIP) NA.10: 1 residues within 4Å: Chain E: F.265 No protein-ligand interaction detected (PLIP) NA.12: 3 residues within 4Å: Chain F: Y.208, F.265, D.268 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:Y.208, F:Y.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, T.P. et al., Crystal structure of hybrid Arabinose isomerase AI-10. To Be Published

Release Date

2021-10-20

Peptides

Hybrid Arabinose isomerase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Hybrid Arabinose isomerase

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