SMTL ID : 7cht.1

Crystal structure of TTK kinase domain in complex with compound 30

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x FZO: 2-[[2-methoxy-4-(2-oxidanylidenepyrrolidin-1-yl)phenyl]amino]-4-(oxan-4-ylamino)-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile(Non-covalent)

FZO.1: 22 residues within 4Å: Chain A: K.15, I.17, G.18, V.25, Q.27, A.37, K.39, I.72, M.88, E.89, C.90, G.91, N.92, I.93, D.94, S.97, A.137, L.140, I.149, M.157, Q.158, P.159 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.17, A:L.140, A:I.149, A:I.149 Hydrogen bonds: A:K.15, A:E.89, A:G.91, A:G.91

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.161, S.163 2 PLIP interactions: 1 Ligand-Water interactions, 1 interactions with chain A Metal complexes: H2O.1, A:S.163 MG.3: 1 residues within 4Å: Chain A: T.162 2 PLIP interactions: 1 Ligand-Water interactions, 1 interactions with chain A Metal complexes: H2O.1, A:T.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, Y. et al., X-ray Crystal Structure-Guided Design and Optimization of 7 H -Pyrrolo[2,3- d ]pyrimidine-5-carbonitrile Scaffold as a Potent and Orally Active Monopolar Spindle 1 Inhibitor. J.Med.Chem. (2021)

Release Date

2021-05-12

Peptides

Dual specificity protein kinase TTK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity protein kinase TTK

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